After a lot of reading and fiddling around I finally figured out the problem.

I pull mail from several accounts to my computer, put in Maildir and then imap
to that. I set up each of those accounts in my mail client so I can send out
through them to the various emails. Whats happening is, mail is coming in and
its sorted by accounts. Its not how I work though.

I spend yesterday playing with Evolution. Setting up filters is a snap but half
the time when I click on a folder for a subfolder, the tree wouldnt expand.
Today, its like 1 in 12 clicks to get it to expand.

So I guess Im going to have to learn TB3. I installed TB2 yesterday but it acted
up and I didnt want to chance an problems.